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Hi there πŸ‘‹

Passionate about the intersection of Computer Science and Biology, I leverage Algorithms and Machine Learning techniques to research and craft innovative tools for sequence (NGS or long-read) data analysis. My research is primarily centered around problems like de novo genome assembly, scaffolding, read alignment, structural variant detection, to name a few.

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Amirhossein Afshinfard's Projects

abyss icon abyss

:microscope: Assemble large genomes using short reads

btl icon btl

:microscope: Bioinformatics Technology Lab of the Genome Sciences Centre

exsv icon exsv

Qu-SV: Quick Detection of Complex Structural Variants in Haploid, Diploid and Cancer Genomes.

fancy-git icon fancy-git

That's a simple prompt changer to show a few cool git informations about your repository on terminal. You can choose among different styles and enjoy all the aliases it provides you. Feel free for contributing, pull requests and issues are always welcome! ;)

gfa-spec icon gfa-spec

Graphical Fragment Assembly (GFA) Format Specification

gfakluge icon gfakluge

A C++ library and utilities for manipulating the Graphical Fragment Assembly format.

jupiterplot icon jupiterplot

A Circos-based tool to visualize genome assembly consistency

ntembd icon ntembd

Deep learning embedding for nucleotide sequences

ntjoin icon ntjoin

πŸ”—Genome assembly scaffolder using minimizer graphs

ntlink icon ntlink

Assembly scaffolder using long reads and minimizers

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