aabiddanda Goto Github PK

aabiddanda.github.io

Personal Website

adna_ld_public

amplicone-tool

AmpliCoNE: Ampliconic Copy Number Estimator

arjun_plot

bmrc_snakemake

bth

scripts for heteroskedastic tests

cannings_model_approximations

Investigating deviations from the Coalescent in the Moran Model

comp_bio_demo_2024

Demo for skype a scientist activity 2024

demes-python

Tools for describing and manipulating demographic models.

emerald

tools to efficiently retrieve and calculate LD

fecundability_model

fiveminutestats

A repo of short "vignettes" illustrating statistical concepts; http://stephens999.github.io/fiveMinuteStats/analysis/

gcta_exercise

Introduction to heritability estimation using GCTA

gdc

Short scripts for converting genetic data between formats.

geosfs_empirical

Obtaining annotated SFS from publicly available datasets across multiple populations

geovar

geovar_rep_paper

Repository to replicate results from the GeoVar paper

haplotype-phasing

makescaffold

Build a haplotype scaffold for a VCF/BCF from a PED file

pbwt

Implementation of Positional Burrows-Wheeler Transform for genetic data

poibin

Poisson Binomial Probability Distribution for Python

primate_amplicone_t2t

project_template

Template for project directories to make sure code is standardized

qtl-power

recipes

Personal Recipes

rmcmc

Recombination MCMC

smcpp

SMC++ infers population history from whole-genome sequence data.

smcpp_bootstrap

Pipeline for running SMC++ on WGS data.

snakemake_demo

Demo repo for new cluster setup with snakemake (excludes configs)

stdpopsim

A library of standard population genetic models