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Hi there šŸ‘‹

  • šŸ”­ Iā€™m a PhD student at the University of Cambridge. I work on deep learning applied to structural biology and drug discovery.

  • I'm currently doing things with proteins at Genentech / Roche / Prescient Design

  • Previously, I was a visiting researcher at EPFL and MILA, AI Resident at X - The Moonshot Factory (formerly Google X) and an ML Consultant at Relation Therapeutics.

  • šŸŒ± Iā€™m currently developing Graphein, a data processing library for geometric deep learning in biology.

    • Graphein supports construction and featurisation of:
      • Protein structure graphs
      • Protein meshes
      • Small molecule graphs
      • RNA structure graphs
      • Protein-protein interaction graphs
      • Gene regulatory interaction graphs

  • šŸ“« How to reach me:

Arian Jamasb's Projects

artisan icon artisan

artisan: visual scope for coffee roasters

biopandas icon biopandas

Working with molecular structures in pandas DataFrames

covid icon covid

Druggability analysis of SARS-CoV-2

cpdb icon cpdb

Cython implementation of PDB -> DataFrame parsing

doom-emacs icon doom-emacs

An Emacs framework for the stubborn martian hacker

dotfiles icon dotfiles

general scripts/set ups I use across multiple machines

drugtranslator icon drugtranslator

R package for translating between drug identifiers using the Chemical Translation Service (CTS)

ethoscope icon ethoscope

a platform from monitoring animal behaviour in real time from a raspberry pi

flowmo icon flowmo

Library for training Gaussian Processes on Molecules

loss-landscapes-gpu icon loss-landscapes-gpu

Approximating neural network loss landscapes in low-dimensional parameter subspaces for PyTorch

mmterm icon mmterm

View proteins and trajectories in the terminal

molplotly icon molplotly

add-on to plotly which show molecule images on mouseover!

npview icon npview

CLI tools for quickly inspecting CSV/TSV & NumPy (.npy) array files

peptirdle icon peptirdle

A clone of the popular game Wordle made using React, Typescript, and Tailwind

protchoir icon protchoir

Protein Complexes and Homo Oligomeric Interfaces Resolver

proteinworkshop icon proteinworkshop

Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)

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