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simonboothroyd's Projects

absolv icon absolv

Absolute solvation free energy calculations with OpenFF and OpenMM

befit icon befit

Bespoke force field parameter fitting

binary-mixture-publication icon binary-mixture-publication

The scripts, inputs and the results generated as part of the *Improved force field accuracy through training against physical properties of mixed systems* publication

chemiwrap icon chemiwrap

A proof of concept refactoring of the OpenFF toolkit registries and wrappers

constructure icon constructure

Construct molecules from diverse scaffolds and fragments.

descent icon descent

Optimize classical force field parameters against reference data

graffan icon graffan

Gradient based analysis of force field optimizations.

mace icon mace

MACE - Fast and accurate machine learning interatomic potentials with higher order equivariant message passing.

molesp icon molesp

Generate and visualize the ESP at the surface of a molecule

nagl icon nagl

A playground for applying graph convolutional networks to molecules.

nonbonded icon nonbonded

A management system for optimising and benchmarking molecular force fields against physical property data.

plotmol icon plotmol

Interactive plotting of data annotated with molecule structures.

smee icon smee

Differentiably evaluate energies using SMIRNOFF force fields

splore icon splore

A GUI for exploring sets of molecules

staged-recipes icon staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

tico icon tico

Torch-based internal coordinate geometry optimization

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