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anguis

Python package implementing a collection of snakemake-related utilities

bioconda-recipes

Conda recipes for the bioconda channel.

clusterpolice

Server/client system to monitor HPC usage

cookbook

Collections of tried and tested recipes

covid-19

molgen_2020

mwga-utils

Collection of utilities for processing Multispecies Whole Genome Alignments

nanopore-snake

Nanopore assembly and polishing pipeline with snakemake

nanopore_comparison

Comparison of several assembly and polishing methods for assembly of Nanopore and Illumina reads

paper-sexdetermination-bowfin

Workflow and scripts used for sex determination analyses in Bowfin

paper-sexdetermination-radsex

RADSex paper analyses workflow

phylocsf

Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions

pileup_test

Testing a simple implementation of pileup with htslib to be integrated in PSASS

polygenic-model

Simulations of polygenic sex-determination system

psass-process

Pipeline to analyse PoolSex data

psass-vis

An R package to visualize results from PSASS

radsex-vis

R package to visualize RADSex results

raid_alert

Discord bot to track boss spawn on a private game server

rosalind

Implementation of rosalind exercises in Python

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

snakemake-slurm

Snakemake profile for Slurm schedulers

umls_tagging

UMLS Tagging project for Analysis of Textual Data course

workshop-snakemake-pypharma2019

Implementation of exercises for the workshop "Snakemake for reproducible analyses"

workshop-snakemake-sibdays2020

Repository for the virtual workshop "Snakemake for reproducible analyses" @ SIB-days 2020

workshop-snakemake-sibdays2022

Repository for the workshop "Introduction to Snakemake" @ SIB-Days 2022

workshop-snakemake-unil2021

Repository for the workshop "Introduction to Snakemake" @ UNIL 2021