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continuous_frc_smlm

Computes the Fourier-ring correlation (FRC) in the continuous domain for single molecule localization microscopy (SMLM)

cryoem-joint-refinement

Joint angular refinement and reconstruction algorithm for single-particle Cryo-EM.

deconvolutionlab2

Java (ImageJ/Fiji) software package for 3D deconvolution microscopy

edf-extended-depth-of-field

An ImageJ plugin for stack focusing. Implementation of several algorithms form max-variance to max-wavelets.

generating-sparse-processes

globalbioim

A unifying Matlab framework for the development of reconstruction algorithms (solving inverse problems) in computational imaging

image-access

A class for the didactic implementation of image-processing algorithms in JavaScript.

interactive-cell-lineage-tracer

ImageJ plugin to track and mesure cells. Chiara Toniolo, Daniel Sage

interactive-kit

A toolkit for interactive visualization of signal and image processing on Jupyter Notebooks.

iplabs-distribution-2023

mij

MIJ Matlab-ImageJ connector

multi-kernel-regression-gtv-

The accompanying codes of the paper "Multi-Kernel Regression with Sparsity Constraint"

orientationj

ImageJ's plugin for directional analysis in images: color-coded analysis, distribution of orientation, vector field, keypoint detection

psfgenerator

A Java software package to generate realistic 3D microscope Point-Spread Function (PSF)

puredenoise

singlecellclassifier

Single Cell Classifier (SCC) is an ImageJ/Fiji plugin that aims to classify cells based on features related to their nuclei and their neighbors.

steer-n-detect

ImageJ plugin - Steerable Template Detector