50-cent Goto Github PK

50-cent.github.io

Tamal's website

cellcounter

Cellcounter localizes neuron cell bodies in a stained slice of rodent brain. It includes stain-specific configurations of Cellcounter.

closed-loop-optogenetics-kapurlab

Closed loop optogenetics for online seizure interruption; Fully convolutional neural network regressor; fast and flexible light pulse delivery

cnn-for-coronary-heart-disease

This work proposed a shallow network with CNN layers to classify patients whether they have coronary heart disease or not based on their clinical and demographic attributes.

coherent-motion-analysis

Discrete point based trend estimation algorithm, effective for investigating large-scale group behavior, such as sinkhole formation and its growth.

elasticpath2path

Morphological categorization of neurons in order to explore their functional features has drawn significant attention over past few decades. The enormous complexity in the structure of neurons poses a real challenge in the identification and analysis of similar and dissimilar neuronal cells. Existing methodologies often carry out strutural and geometrical simplifications, which substantially changes the morphological statistics. Using digitally-reconstructed neurons, we extend the work of Path2Path as ElasticP2P, which seamlessly integrates the graph-theoretic and differential-geometric frameworks. By decomposing a neuron into a set of paths, we derive graph metrics, which are path concurrence and path hierarchy. Next, we model each path as an elastic string to compute the geodesic distance between the paths of a pair of neurons. Later, we formulate the problem of finding the distance between two neurons as a path assignment problem with a cost function combining the graph metrics and the geodesic deformation of paths.

lineagetrace

Pseudotime reconstruction of complex transcriptional trajectories

neuropath2path

"NeuroPath2Path: Classification and elastic morphing between neuronal arbors using path-wise similarity" - Tamal Batabyal, Barry Condron, Scott T. Acton.

path2path

Basu, Saurav, Barry Condron, and Scott T. Acton. "Path2Path: Hierarchical path-based analysis for neuron matching." Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on. IEEE, 2011.

precog

road_smoothness

Road smoothness toolbox monitors health of road and pavements utilizing InSAR time-series data