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Hi šŸ‘‹ ā€” I'm Rob

I lead the COMBINE-lab at the University of Maryland, where I am an associate professor of Computer Science and a member of UMIACS and the Center for Bioinformatics and Computational Biology. We (the COMBINE-lab) work mostly on algorithms and data structures for efficient processing, indexing, querying, and inference in high-throughput sequencing data.

Some Info

šŸŒ± Iā€™m currently learning Rust (and think it is a strong contender to replace / augment C++ in compute-intensive bioinformatics applications)!

šŸ‘Æ Iā€™m looking to collaborate on interesting projects related to processing, indexing, querying, and inference in high-throughput sequencing data (after all, it's what we do!).

Rob Patro's Projects

angus icon angus

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

awesome-single-cell icon awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bbhash icon bbhash

Bloom-filter based minimal perfect hash function library

bibget icon bibget

Generate BibTex entry from a DOI. Written in Rust and based on the doi2bib crate.

boom icon boom

A hash map using the BooPHF perfect hash function

cellrangerrkit icon cellrangerrkit

Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)

chobo-shl icon chobo-shl

A collection of single-header C++11 libraries by Chobolabs

clipp icon clipp

easy to use, powerful & expressive command line argument parsing for modern C++ / single header / usage & doc generation

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