openworm Goto Github PK

.github

The OpenWorm organisation template repository.

behavioral_syntax

behavioral syntax analysis based on the paper of Andre Brown

bionet

Artificial biological neural network

blender2neuroml

Conversion script to bring neuron models created in Blender into NeuroML format

bluebrainprojectshowcase

A project to illustrate how models and data from the Blue Brain Project can be converted to NeuroML and PyNN

bt-gsoc-2019

End to end process of the Framework including a BitTorrent Client, Access Control and Data Integrity checks.

c302

The c302 framework for generating multiscale network models of C. elegans

ce_locomotion

Neuromechanical model of locomotion in C. elegans, originally developed by Eduardo Izquerdo, Erick Olivares and Randall Beer

celegansneuromechanicalgaitmodulation

C elegans Neuromechanical Gait Modulation Model

celegansneuroml

NeuroML based C elegans model, contained in a neuroConstruct project, as well as c302

channelworm

Tools and curated datasets to build quantitative models of C. elegans ion channels

channelworm2

Tools and curated datasets to build quantitative models of C. elegans ion channels

connectomes

Information on published connectomics data related to C. elegans

cyberelegans

Neuromechanical model of C. Elegans

geppetto-application

Sample Geppetto application

geppetto-client

The web client of a Geppetto application

heuristicworm

hodgkin_huxley_tutorial

A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook

hydramuscle

A biophysical model of the muscle of Hydra

jenkins

johnsonmailler_musclemodel

C. elegans muscle model from Johnson & Mailler 2015

model_completion_dashboard

Model Completion Dashboard

movement_cloud

Movement Analysis on the cloud

movement_validation_cloud

Previous attempt at a movement validation cloud application

multi-dev-sibernetic

Multi devices sibernetic engine

muscle_model

Model of C elegans body wall muscle based on Boyle & Cohen 2008

neuronal-analysis

Tools to produce, analyse and compare both simulated and recorded neuronal datasets

neuropal

Scripts to analyse and convert NeuroPAL datasets

newsletter

A repository containing a newsletter with regular OpenWorm updates

nicolettietal2019_neuronmodels

Biophysical models of AWCon and RMD C. elegans neurons (M. Nicoletti at al. 2019)