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16s-rrna-orientation

reverse complement 16S rRNA genes so that they are always in the correct orientation

aho-corasick

A-C implementation in "C". Tight-packed (interleaved) state transition matrix -- as fast as it gets, as small as it gets.

amplishot

microbial community profiling using amplicon-shotgun sequencing

amr

amr_finder

aws-sdk-smalltalk

AWS SDK for Smalltalk

baby_tracker

bam2fpkc

Abundance profile construction for contigs or bins

bam2graph

figure out paired end links between contigs

bamdepth

Calculate the coverage from a bam file

barrnap

Bacterial ribosomal RNA predictor

bbbin

A collection of working and non-working bioinformatics scripts

bioawk

BWK awk modified for biological data

biograpy

Biological Graphic tool in Python

bioperl-live

Core BioPerl 1.x code

biopython

Official git repository for Biopython (converted from CVS)

biosql

biosql-extensions

Extra tables and views to be loaded into a BioSQL database for proteomic and genomic applications

biosql.github.io

Source of biosql.org website, migrated from MediaWiki

bob-ross

Shiny app for filtering Bob Ross episodes based on their components

booklet-dataframe

A little booklet to master dataframe

buddysuite

Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files

checkm

Beta check your meta before you wreck your meta

comparem

A toolbox for comparative genomics.

conditional-highlighter

highlight tables like excel's conditional formatting

cookiecutter-pypackage

Cookiecutter template for a Python package.

crass

The CRISPR assembler

crisprtools

small utilities for manipulating .crispr files

ctskennerton.github.io

dataframe

DataFrame in Pharo - tabular data structures for data analysis

draw_tree

wrapper script built on ete toolkit to make it attractive looking phylogenetic trees