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ahagenome

script associated with A. halleri genome assembly

apiaceaefns1

FNS I evolution in Apiaceae

appliedgenomeresearch

course about NGS data processing: genomics and transcriptomics

appliedplantgenomics

materials and scripts used for Applied Plant Genomics

appliedplanttranscriptomics

Collection of materials belonging to the Applied Plant Transcriptomics course

appls

Applied Python Programming for Life Scientists

at7

Python scripts related to the At7 sequencing project

athamap

script associated with the AthaMap database

banana

banana_transcriptomics

scripts associated with banana transcriptomics

bananamyb

scripts associated with the genome-wide analysis of MYBs in the banana genome

beetresmabs

scripts related to analyses performed for beetresmabs

bhlh_annotator

automatic annotation of bHLH gene family in plants

bnageneticmarkers

analysis and mapping of genetic markers in Brassica napus

boas_pucker

Homepage of Boas Pucker listing publications and professional activities

camybs

investigation of the R2R3 MYBs in Cicer arietinum

caryoanthoblock

investigation of expression levels of anthocyanin biosynthesis genes in the Caryophyllales

chs

CHS gene structure prediction analysis

codi

color differences between plant species

codon_usage

script associated with codon usage

coexp

Co-Expression analysis tool

dataliteracyinplantsciences

scripts and data sets associated with Data Literacy in Plant Sciences course

dfr_vs_fls

competing branches of the flavonoid biosynthesis

digi_fellowship

materials in relation to my digital teaching fellowship

figures

collection of figures to display on github

flavonoidfriday

Flavonoids are specialized metabolites in plants that have numerous functions including protection against abiotic stresses, pigmentation, and repelling herbivores.This repository provides additional background to the #FlavonoidFriday tweets

genomeassemblies2018

all scripts involved in the genome assembly and investigation process

genomeassembly

collection of tools for the analysis and cleaning of genome assemblies

gkseq

scripts for Arabidopsis thaliana resequencing analyses

kipes

Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new transcriptome of genome sequence assembly.